ToolkitNot tested

Deep Researcher Agent

Continuous experiment-operations agent for GPU research

Deep Researcher Agent installs matching Claude Code commands and Codex Skills for iterative GPU experiments, progress tracking, paper discovery, paper analysis, conference search, and optional Obsidian notes.

For: Doctoral Researchers, Academic Researchers, Research Software Developers

GitHub stars
1,244
Licence
Apache-2.0
Source updated
3 Jun 2026
Access
Publicly available

What this resource does

Core uses

About this resource

Deep Researcher Agent installs matching Claude Code commands and Codex Skills for iterative GPU experiments, progress tracking, paper discovery, paper analysis, conference search, and optional Obsidian notes.

This page groups representative academic components by task; review the repository for the complete inventory.

01

Iterative experiment operations

Edits research code, launches GPU training, monitors results, records each cycle, and proposes the next bounded variation.

Typical inputs
PROJECT_BRIEF.md with goal, codebase, search space, and constraints; GPU, project code, data, and stopping rules
Output
Experiment code, logs, ledger entries, metrics, and progress state.

Best for: Researchers who already know the experiment they want to run and need help with repetitive operations.

Components for this task

auto-experiment

Runs the iterative code, training, monitoring, and reflection loop.

experiment-status

Reports the current experiment goal, best result, cycle count, and recent decisions.

Suggested workflow requests (2)

Run the auto-experiment workflow for the project in /path/to/project using GPU 0.

Show the current experiment status, including the best result, cycle count, and recent decisions.

Adapted into complete requests from official trigger wording in README.md.

02

Paper and conference tracking

Searches recent papers, analyses selected papers, and tracks relevant conference information.

Typical inputs
Research topic, paper identifier, or conference criteria
Output
Paper records, analysis notes, or conference-search results.

Best for: Keeping the experiment loop connected to current literature and deadlines.

Components for this task

daily-papers

Tracks recent papers relevant to a configured topic.

paper-analyze

Analyses a selected research paper.

conf-search

Searches for relevant conference information.

03

Progress reporting and notes

Produces status summaries and writes optional Obsidian or local-text research notes.

Typical inputs
Experiment workspace and optional Obsidian vault
Output
A structured progress report and persistent research notes.

Best for: Reviewing current state without reading every training log.

Components for this task

progress-report

Creates a structured progress summary from the experiment workspace.

obsidian-sync

Synchronises experiment notes to Obsidian or local text.

Use boundaries

Limits and checks

Autonomous compute use

It can consume compute, API budget, and researcher time while following an unproductive direction.

Set cycle and hourly limits, monitor the ledger, and use human directives and stop rules.

Remote execution

A configuration or command error can affect remote research infrastructure.

Use a restricted account, isolated project directory, and reviewed command permissions.

Result validity

It may optimise the wrong metric, leak data, or overfit repeated trials.

Pre-register evaluation rules and independently rerun and inspect key results.

More boundaries
  • Do not start the experiment loop without a concrete PROJECT_BRIEF.md, accessible code and data, and explicit stopping rules.
  • The controller does not establish that an experimental design, metric, or claimed improvement is scientifically valid.
  • One successful run or one agent-selected variation is not sufficient evidence for a research conclusion.
Technical details
Resource type
Toolkit
Author or maintainer
Xiangyue-Zhang
Source last updated
3 Jun 2026
Last verified
15 Jul 2026
Documented applications
Claude Code, Codex
Documented AI models
Claude, OpenAI-compatible models, DeepSeek, Qwen, Kimi, GLM
Licence
Apache-2.0
Access
Publicly available
Additional costs
Platform terms or usage limits may apply. API usage fees may apply for selected components. External services, software, compute, or data access may have separate costs.
Skill instruction language
English
Documentation language
English
Repository languages
Python, Markdown
Dependencies
Python 3.10 or later; Claude Code or Codex; One or more NVIDIA GPUs; Configured API or logged-in CLI provider; Git and component-specific training packages
Review status
Not tested

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Install Deep Researcher Agent