What this resource does

Core uses

About this resource

My Claude Code Setup is a project template with Skills, agents, rules, validation scripts, and examples for academic literature reviews, data analysis, papers, lectures, and reproducibility checks.

This page groups representative academic components by task; review the repository for the complete inventory.

I want toLiterature review and research planning I want toData analysis and reproducibility I want toPaper and teaching-material review

Literature review and research planning

Provides Skills for literature-review work, research ideation, and data-management planning within a project repository.

Typical inputs: Research question and scope; Papers, sources, or project context
Output: A project-based literature review, research plan, or data-management artifact.

Best for: Starting or organising an academic project in Claude Code.

Components for this task

lit-review

Runs the repository's literature-review workflow.

Official guide

research-ideation

Supports research-question and project-idea development.

Official guide

Data analysis and reproducibility

Uses project Skills to analyse data, review R code, and audit whether research artifacts can be reproduced.

Typical inputs: Dataset, scripts, variable definitions, and analysis objective
Output: Analysis files, code-review findings, or a reproducibility audit.

Best for: Academic projects that keep data, code, and output together under version control.

Components for this task

data-analysis

Runs a project-based data-analysis workflow.

Official guide

audit-reproducibility

Checks a research project for reproducibility gaps.

Official guide

Paper and teaching-material review

Includes paper-review, LaTeX, Quarto, lecture, and slide-quality workflows.

Typical inputs: Draft paper, lecture content, or presentation project; Review criteria and target format
Output: A reviewed manuscript, compiled document, lecture deck, or issue report.

Best for: Revising a research or teaching deliverable inside the configured project.

Components for this task

review-paper

Reviews an academic paper through the repository's referee workflow.

Official guide

create-lecture

Builds lecture material using the repository's academic presentation workflow.

Official guide

Use boundaries

Limits and checks

Project permissions

Claude Code may make broad local changes when a task is accepted.

Inspect settings, keep version control active, and use the least-permissive mode suitable for the task.

Tool-specific setup

A workflow may fail or produce partial artifacts when a dependency is absent.

Run the official setup validator and install only requirements for the selected workflow.

Academic evidence

A polished artifact may still contain unsupported claims or incorrect citations.

Verify sources, calculations, quotations, and substantive conclusions before use.

More boundaries

This repository is a whole-project template, not a set of Skills that can be assumed to work unchanged in any existing project.
A workflow cannot run when its required local tools, source files, data, or permissions are missing.
Review scores and automated checks do not replace disciplinary judgement, source verification, or institutional approval.

Technical details

Resource type: Toolkit
Author or maintainer: pedrohcgs
Latest release: v1.9.0 — guide refresh + ecosystem catch-up (v1.9.0)
Source last updated: 10 Jun 2026
Last verified: 15 Jul 2026
Documented applications: Claude Code, Visual Studio Code
Documented AI models: Claude
Licence: MIT
Access: Publicly available
Additional costs: Platform terms or usage limits may apply. API usage fees may apply for selected components. External services, software, compute, or data access may have separate costs.
Skill instruction language: English
Documentation language: English
Repository languages: HTML, Markdown
Dependencies: Claude Code; Git; Workflow-specific tools such as R, Quarto, XeLaTeX, Python, or GitHub CLI
Review status: Not tested

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